STRINGSTRING
Slin_6010 protein (Spirosoma linguale) - STRING interaction network
"Slin_6010" - Outer membrane efflux protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6010Outer membrane efflux protein (462 aa)    
Predicted Functional Partners:
Slin_6009
RND family efflux transporter MFP subunit (356 aa)
 
          0.876
Slin_6011
TetR family transcriptional regulator (203 aa)
 
          0.871
Slin_6008
Acriflavin resistance protein (1026 aa)
 
          0.782
Slin_4223
Hypothetical protein (542 aa)
   
          0.747
Slin_5097
Hypothetical protein (727 aa)
   
          0.739
Slin_4506
Hypothetical protein (436 aa)
   
          0.732
Slin_4736
Peptidase M28 (497 aa)
   
          0.720
Slin_4224
TonB-dependent receptor plug (1063 aa)
   
          0.678
Slin_2543
Hypothetical protein (607 aa)
   
          0.671
Slin_4308
Fibronectin type III domain-containing protein (1377 aa)
   
          0.622
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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