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Slin_6057 protein (Spirosoma linguale) - STRING interaction network
"Slin_6057" - Mechanosensitive ion channel MscS in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6057Mechanosensitive ion channel MscS (779 aa)    
Predicted Functional Partners:
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (1148 aa)
       
      0.890
Slin_2392
Hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (329 aa)
       
      0.865
Slin_6159
Integrase family protein (387 aa)
   
          0.699
Slin_2733
Hypothetical protein (570 aa)
   
          0.667
Slin_6058
Hypothetical protein (35 aa)
              0.599
Slin_2362
Outer membrane efflux protein (446 aa)
 
 
      0.584
Slin_6590
NodT family RND efflux system outer membrane lipoprotein (484 aa)
     
      0.532
Slin_5197
NodT family RND efflux system outer membrane lipoprotein (492 aa)
     
      0.532
Slin_2949
NodT family RND efflux system outer membrane lipoprotein (476 aa)
     
      0.532
Slin_0820
NodT family RND efflux system outer membrane lipoprotein (475 aa)
     
      0.532
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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