STRINGSTRING
Slin_6083 protein (Spirosoma linguale) - STRING interaction network
"Slin_6083" - DinB family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6083DinB family protein (172 aa)    
Predicted Functional Partners:
Slin_4139
Hypothetical protein (152 aa)
   
          0.704
Slin_2478
Hypothetical protein (473 aa)
   
          0.595
Slin_2860
Hypothetical protein (168 aa)
   
          0.560
Slin_0339
Hypothetical protein (230 aa)
   
          0.555
Slin_5238
Hypothetical protein (150 aa)
   
          0.536
Slin_6082
Hypothetical protein (252 aa)
              0.502
Slin_1077
Hypothetical protein (176 aa)
   
          0.473
Slin_5341
Hypothetical protein (300 aa)
   
          0.455
Slin_0462
Outer membrane efflux protein (451 aa)
   
          0.452
Slin_1227
TonB-dependent receptor plug (923 aa)
   
          0.440
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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