STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6098PFAM: response regulator receiver; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; SMART: response regulator receiver; KEGG: bph:Bphy_4576 response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (553 aa)    
Predicted Functional Partners:
Slin_3199
Two component transcriptional regulator, AraC family; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn- helix, AraC domain; histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: pat:Patl_1836 two component AraC family transcriptional regulator.
  
 
 0.926
Slin_2612
PFAM: aminotransferase class V; KEGG: scl:sce8911 class-V aminotransferase.
 
 
 0.917
Slin_6097
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; SMART: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; KEGG: bph:Bphy_4577 cyclic nucleotide-binding protein.
 
 
 0.917
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.909
Slin_0166
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: reh:H16_B1515 cysteine desulfurase (SufS); Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.905
Slin_5637
Cystathionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afw:Anae109_3845 cystathionine gamma-lyase.
   
 
 0.905
Slin_6099
KEGG: bpy:Bphyt_5493 zinc finger UBP-type protein.
 
  
 0.896
Slin_6561
KEGG: similar to sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; CHASE3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein.
  
 
 0.885
Slin_3102
Signal transduction histidine kinase with CheB and CheR activity; KEGG: eba:ebA2146 regulator protein; TIGRFAM: PAS sensor protein; PFAM: MCP methyltransferase CheR-type; PAS fold-3 domain protein; CheB methylesterase; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; PAC repeat- containing protein; histidine kinase A domain protein; ATP- binding region ATPase domain protein; PAS domain containing protein.
  
 
 0.870
Slin_0621
KEGG: dar:Daro_4142 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; Hpt domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein.
  
 
 0.868
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.