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Slin_6103 protein (Spirosoma linguale) - STRING interaction network
"Slin_6103" - Protoporphyrinogen oxidase in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6103Protoporphyrinogen oxidase (454 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX (353 aa)
 
 
  0.958
Slin_2294
Coproporphyrinogen oxidase (304 aa)
   
 
  0.949
Slin_3571
Oxygen-independent coproporphyrinogen III oxidase (460 aa)
   
 
  0.945
Slin_0326
Mg-chelatase subunit ChlI-like protein (510 aa)
   
 
  0.924
Slin_2843
Oxygen-independent coproporphyrinogen III oxidase (374 aa)
   
 
  0.923
Slin_4052
Mg chelatase subunit ChlI (513 aa)
         
    0.900
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (339 aa)
 
   
  0.880
Slin_6104
Hypothetical protein (112 aa)
              0.859
Slin_4813
dTDP-4-dehydrorhamnose 3,5-epimerase (173 aa)
   
        0.715
Slin_0434
dTDP-4-dehydrorhamnose 3,5-epimerase (181 aa)
   
        0.715
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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