STRINGSTRING
Slin_6142 protein (Spirosoma linguale) - STRING interaction network
"Slin_6142" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6142TonB-dependent receptor (857 aa)    
Predicted Functional Partners:
Slin_1769
TonB-dependent receptor plug (1085 aa)
   
          0.737
Slin_4534
TonB-dependent receptor (779 aa)
   
          0.689
Slin_4224
TonB-dependent receptor plug (1063 aa)
   
          0.686
Slin_1872
Hypothetical protein (401 aa)
   
          0.670
Slin_5609
PDZ/DHR/GLGF domain-containing protein (421 aa)
   
          0.636
Slin_2915
Hypothetical protein (345 aa)
   
          0.623
Slin_3035
Hypothetical protein (533 aa)
   
          0.620
Slin_3169
TonB-dependent receptor (813 aa)
   
          0.611
Slin_1165
Hypothetical protein (499 aa)
   
          0.587
Slin_3170
TonB-dependent receptor (827 aa)
   
          0.578
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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