STRINGSTRING
Slin_6159 protein (Spirosoma linguale) - STRING interaction network
"Slin_6159" - Integrase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6159Integrase family protein (387 aa)    
Predicted Functional Partners:
Slin_6057
Mechanosensitive ion channel MscS (779 aa)
   
          0.699
Slin_6160
Hypothetical protein (59 aa)
              0.593
Slin_4475
TonB-dependent receptor (955 aa)
   
          0.584
Slin_1226
Hypothetical protein (371 aa)
   
          0.581
Slin_6158
Hypothetical protein (90 aa)
              0.563
Slin_4783
RagB/SusD domain-containing protein (548 aa)
   
          0.547
Slin_1663
Lysine exporter protein LysE/YggA (212 aa)
   
          0.513
Slin_0221
Hypothetical protein (484 aa)
   
          0.512
Slin_1225
Hypothetical protein (801 aa)
   
          0.490
Slin_5680
Hypothetical protein (125 aa)
   
          0.476
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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