STRINGSTRING
Slin_6194 protein (Spirosoma linguale) - STRING interaction network
"Slin_6194" - Major facilitator superfamily protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6194Major facilitator superfamily protein (453 aa)    
Predicted Functional Partners:
Slin_6195
Hypothetical protein (478 aa)
              0.859
Slin_6196
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate (393 aa)
   
   
  0.683
Slin_4786
Glucuronate isomerase (477 aa)
   
   
  0.565
Slin_1060
Glucuronate isomerase (470 aa)
   
   
  0.565
Slin_2290
Major facilitator superfamily protein (426 aa)
   
          0.537
Slin_6198
Short-chain dehydrogenase/reductase SDR (260 aa)
              0.515
Slin_2628
GntR family transcriptional regulator (234 aa)
 
        0.490
Slin_6197
Alpha-glucuronidase (707 aa)
 
          0.479
Slin_6193
Muconate lactonizing mandelate racemase protein (425 aa)
              0.453
Slin_1247
Mannitol dehydrogenase domain-containing protein (525 aa)
   
   
  0.440
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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