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Slin_6199 protein (Spirosoma linguale) - STRING interaction network
"Slin_6199" - N-acetyltransferase GCN5 in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6199N-acetyltransferase GCN5 (173 aa)    
Predicted Functional Partners:
Slin_6200
Type I phosphodiesterase/nucleotide pyrophosphatase (413 aa)
              0.599
Slin_6198
Short-chain dehydrogenase/reductase SDR (260 aa)
              0.579
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (201 aa)
   
      0.565
Slin_6197
Alpha-glucuronidase (707 aa)
              0.546
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (105 aa)
 
          0.469
Slin_2319
Glutamate synthase (1524 aa)
           
  0.434
Slin_4269
Pseudaminic acid synthase (351 aa)
   
   
  0.423
Slin_4262
UDP-N-acetylglucosamine 4,6-dehydratase (338 aa)
         
  0.406
Slin_4182
UTP-glucose-1-phosphate uridylyltransferase (287 aa)
   
        0.400
Slin_2596
Nucleotidyl transferase (319 aa)
   
        0.400
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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