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Slin_6217 protein (Spirosoma linguale) - STRING interaction network
"Slin_6217" - 40-residue YVTN family beta-propeller repeat-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_621740-residue YVTN family beta-propeller repeat-containing protein (829 aa)    
Predicted Functional Partners:
Slin_6377
Hypothetical protein (340 aa)
   
          0.756
Slin_5108
Hypothetical protein (387 aa)
   
          0.738
Slin_1280
Penicillin-binding protein transpeptidase (1323 aa)
   
          0.699
Slin_3400
TonB-dependent receptor plug (1057 aa)
   
          0.679
Slin_3399
Hypothetical protein (531 aa)
   
          0.678
Slin_1716
Hypothetical protein (514 aa)
   
          0.667
Slin_0801
TonB-dependent receptor plug (1116 aa)
   
          0.657
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate (311 aa)
              0.638
Slin_6216
40-residue YVTN family beta-propeller repeat-containing protein (911 aa)
 
       
0.615
Slin_4520
Glycoside hydrolase family protein (906 aa)
   
          0.595
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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