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Slin_6228 protein (Spirosoma linguale) - STRING interaction network
"Slin_6228" - RagB/SusD domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6228RagB/SusD domain-containing protein (511 aa)    
Predicted Functional Partners:
Slin_6229
TonB-dependent receptor plug (1137 aa)
 
          0.931
Slin_6227
Hypothetical protein (420 aa)
 
          0.871
Slin_5419
TonB-dependent receptor plug (1102 aa)
   
          0.773
Slin_4979
TonB-dependent receptor plug (1188 aa)
   
          0.772
Slin_2729
TonB-dependent receptor plug (999 aa)
   
          0.768
Slin_5420
RagB/SusD domain-containing protein (575 aa)
   
          0.767
Slin_3960
TonB-dependent receptor plug (1142 aa)
   
          0.765
Slin_3961
Hypothetical protein (520 aa)
   
          0.758
Slin_4505
TonB-dependent receptor plug (1046 aa)
   
          0.753
Slin_1274
TonB-dependent receptor plug (1066 aa)
   
          0.753
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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