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Slin_6245 protein (Spirosoma linguale) - STRING interaction network
"Slin_6245" - phytanoyl-CoA dioxygenase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6245phytanoyl-CoA dioxygenase (320 aa)    
Predicted Functional Partners:
Slin_4495
Hypothetical protein (489 aa)
   
          0.726
Slin_3438
Late embryogenesis abundant protein 2 (304 aa)
   
          0.712
Slin_2141
Hypothetical protein (138 aa)
   
          0.702
Slin_3819
Hypothetical protein (136 aa)
   
          0.692
Slin_3951
RagB/SusD domain-containing protein (491 aa)
   
          0.675
Slin_0519
Hypothetical protein (239 aa)
   
          0.627
Slin_2117
Hypothetical protein (136 aa)
   
          0.617
Slin_0876
Hypothetical protein (136 aa)
   
          0.615
Slin_3770
Hypothetical protein (160 aa)
   
          0.605
Slin_0855
Hypothetical protein (142 aa)
   
          0.598
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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