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Slin_6251 protein (Spirosoma linguale) - STRING interaction network
"Slin_6251" - MATE efflux family protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6251MATE efflux family protein (461 aa)    
Predicted Functional Partners:
Slin_1917
PhoH family protein (321 aa)
       
      0.541
Slin_4035
NIPSNAP family containing protein (264 aa)
   
          0.536
Slin_6250
Bifunctional deaminase-reductase domain-containing protein (182 aa)
   
        0.485
Slin_5511
Phospholipase/carboxylesterase (216 aa)
   
          0.462
Slin_2508
PAS/PAC sensor hybrid histidine kinase (784 aa)
     
 
  0.457
Slin_1698
Oxidoreductase domain-containing protein (374 aa)
 
        0.449
Slin_0014
Amidohydrolase 2 (374 aa)
   
          0.431
Slin_6028
Phosphoesterase RecJ domain-containing protein (343 aa)
   
        0.408
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (1148 aa)
   
        0.408
rbfA
Ribosome-binding factor A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (126 aa)
   
        0.408
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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