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Slin_6284 protein (Spirosoma linguale) - STRING interaction network
"Slin_6284" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6284ECF subfamily RNA polymerase sigma-24 subunit (227 aa)    
Predicted Functional Partners:
Slin_6285
anti-FecI sigma factor FecR (333 aa)
 
          0.914
Slin_0105
anti-FecI sigma factor FecR (339 aa)
   
          0.766
Slin_2374
anti-FecI sigma factor FecR (351 aa)
   
          0.765
Slin_3389
anti-FecI sigma factor FecR (355 aa)
 
          0.761
Slin_1219
anti-FecI sigma factor FecR (333 aa)
 
          0.761
Slin_2763
anti-FecI sigma factor FecR (381 aa)
   
          0.754
Slin_5656
anti-FecI sigma factor FecR (332 aa)
 
          0.753
Slin_5799
anti-FecI sigma factor FecR (368 aa)
   
          0.753
Slin_4980
anti-FecI sigma factor FecR (342 aa)
   
          0.753
Slin_0867
anti-FecI sigma factor FecR (372 aa)
   
          0.749
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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