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Slin_6318 protein (Spirosoma linguale) - STRING interaction network
"Slin_6318" - MarR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6318MarR family transcriptional regulator (145 aa)    
Predicted Functional Partners:
Slin_6317
Fumarylacetoacetase (390 aa)
              0.815
Slin_6316
Hypothetical protein (160 aa)
              0.574
Slin_6315
Hypothetical protein (218 aa)
              0.574
Slin_6314
Flavin reductase (294 aa)
              0.574
Slin_6319
Phenylalanine-4-hydroxylase (261 aa)
              0.564
Slin_6320
4-hydroxyphenylpyruvate dioxygenase (377 aa)
              0.518
Slin_6321
Homogentisate 12-dioxygenase (396 aa)
              0.437
Slin_6313
GumN family protein (285 aa)
              0.432
Slin_6312
ECF subfamily RNA polymerase sigma-24 subunit (162 aa)
              0.408
Slin_6311
Hypothetical protein (212 aa)
              0.408
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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