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Slin_6321 protein (Spirosoma linguale) - STRING interaction network
"Slin_6321" - Homogentisate 12-dioxygenase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6321Homogentisate 12-dioxygenase (396 aa)    
Predicted Functional Partners:
Slin_6320
4-hydroxyphenylpyruvate dioxygenase (377 aa)
 
 
  0.999
Slin_6317
Fumarylacetoacetase (390 aa)
 
   
  0.921
Slin_6319
Phenylalanine-4-hydroxylase (261 aa)
 
   
  0.844
Slin_1544
Fumarylacetoacetate hydrolase (302 aa)
 
   
  0.815
Slin_3536
Carbamoyl-phosphate synthase L chain ATP-binding protein (517 aa)
     
        0.632
Slin_0413
5-carboxymethyl-2-hydroxymuconatedelta- isomerase (284 aa)
   
   
  0.576
Slin_0979
Fumarylacetoacetate hydrolase (212 aa)
   
   
  0.573
Slin_5738
Hypothetical protein (173 aa)
   
          0.552
Slin_6314
Flavin reductase (294 aa)
 
          0.528
Slin_4982
Fatty acid desaturase (343 aa)
     
        0.522
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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