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Slin_6340 protein (Spirosoma linguale) - STRING interaction network
"Slin_6340" - SMC domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6340SMC domain-containing protein (420 aa)    
Predicted Functional Partners:
Slin_6341
Hypothetical protein (245 aa)
 
          0.971
Slin_0057
Hypothetical protein (341 aa)
   
          0.586
Slin_4161
Glycoside hydrolase family protein (451 aa)
   
          0.579
Slin_5261
Glycoside hydrolase family protein (453 aa)
   
          0.552
Slin_6339
FG-GAP repeat-containing protein (406 aa)
              0.550
Slin_6233
Hypothetical protein (406 aa)
   
          0.528
Slin_6258
N-6 DNA methylase (787 aa)
 
          0.473
Slin_6260
Restriction modification system DNA specificity domain-containing protein (441 aa)
 
          0.471
Slin_1011
Hypothetical protein (153 aa)
   
          0.470
Slin_6264
Type III restriction protein res subunit (1016 aa)
 
          0.466
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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