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rpmE2 protein (Spirosoma linguale) - STRING interaction network
"rpmE2" - 50S ribosomal protein L31 in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE250S ribosomal protein L31 (90 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal protein L28 (79 aa)
 
 
  0.988
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
   
 
  0.979
rplQ
50S ribosomal protein L17 (204 aa)
   
 
  0.978
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (124 aa)
   
 
  0.976
rpmA
50S ribosomal protein L27 (100 aa)
   
 
  0.976
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (177 aa)
   
 
  0.965
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (105 aa)
   
 
  0.962
rpmI
50S ribosomal protein L35 (64 aa)
   
 
  0.959
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (117 aa)
   
 
  0.958
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (209 aa)
   
 
  0.956
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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