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Slin_6387 protein (Spirosoma linguale) - STRING interaction network
"Slin_6387" - Family 2 glycosyl transferase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6387Family 2 glycosyl transferase (340 aa)    
Predicted Functional Partners:
Slin_0721
Family 2 glycosyl transferase (297 aa)
   
          0.769
Slin_5840
dTDP-glucose 4,6-dehydratase (352 aa)
 
     
  0.739
Slin_0434
dTDP-4-dehydrorhamnose 3,5-epimerase (181 aa)
 
   
  0.714
Slin_2385
Hypothetical protein (901 aa)
 
          0.711
Slin_6386
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (109 aa)
              0.701
Slin_4364
Family 2 glycosyl transferase (294 aa)
   
          0.691
Slin_4815
dTDP-4-dehydrorhamnose reductase (299 aa)
 
   
  0.688
Slin_4813
dTDP-4-dehydrorhamnose 3,5-epimerase (173 aa)
 
   
  0.669
Slin_1528
Hypothetical protein (984 aa)
   
          0.654
Slin_2571
ABC transporter (419 aa)
 
   
  0.651
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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