STRINGSTRING
Slin_6400 protein (Spirosoma linguale) - STRING interaction network
"Slin_6400" - Polysaccharide biosynthesis protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6400Polysaccharide biosynthesis protein (431 aa)    
Predicted Functional Partners:
Slin_6307
Capsular exopolysaccharide family protein (772 aa)
 
 
  0.758
Slin_4165
UDP-galactopyranose mutase (373 aa)
 
 
  0.700
Slin_6399
Sugar transferase (224 aa)
 
   
  0.679
Slin_6403
Transferase (214 aa)
 
   
  0.631
Slin_6398
Capsular exopolysaccharide family protein (775 aa)
 
   
  0.630
Slin_3110
Family 2 glycosyl transferase (325 aa)
 
   
  0.591
Slin_6402
Group 1 glycosyl transferase (401 aa)
              0.590
Slin_6401
Hypothetical protein (384 aa)
              0.587
Slin_6405
Group 1 glycosyl transferase (384 aa)
   
   
  0.584
Slin_0434
dTDP-4-dehydrorhamnose 3,5-epimerase (181 aa)
 
   
  0.579
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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