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Slin_6411 protein (Spirosoma linguale) - STRING interaction network
"Slin_6411" - NAD-dependent epimerase/dehydratase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6411NAD-dependent epimerase/dehydratase (357 aa)    
Predicted Functional Partners:
Slin_5177
Family 2 glycosyl transferase (256 aa)
 
   
  0.761
Slin_6307
Capsular exopolysaccharide family protein (772 aa)
   
 
  0.706
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
   
  0.655
Slin_4077
Nucleotide sugar dehydrogenase (444 aa)
   
 
  0.619
Slin_4132
Hypothetical protein (202 aa)
   
          0.600
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (370 aa)
   
 
  0.596
Slin_4813
dTDP-4-dehydrorhamnose 3,5-epimerase (173 aa)
   
 
  0.594
Slin_0434
dTDP-4-dehydrorhamnose 3,5-epimerase (181 aa)
   
 
  0.594
Slin_4071
UDP-N-acetylglucosamine 2-epimerase (368 aa)
   
   
  0.574
Slin_4815
dTDP-4-dehydrorhamnose reductase (299 aa)
   
 
  0.569
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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