STRINGSTRING
Slin_6421 protein (Spirosoma linguale) - STRING interaction network
"Slin_6421" - PHP domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6421PHP domain-containing protein (255 aa)    
Predicted Functional Partners:
Slin_6307
Capsular exopolysaccharide family protein (772 aa)
   
  0.909
Slin_6398
Capsular exopolysaccharide family protein (775 aa)
   
  0.896
Slin_4355
Capsular exopolysaccharide family protein (767 aa)
   
  0.894
Slin_0726
Capsular exopolysaccharide family protein (783 aa)
   
  0.894
Slin_4089
Capsular exopolysaccharide family protein (759 aa)
   
  0.892
Slin_6399
Sugar transferase (224 aa)
 
   
  0.608
Slin_0725
Sugar transferase (221 aa)
 
   
  0.606
Slin_4921
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (459 aa)
 
   
  0.604
Slin_4356
Sugar transferase (225 aa)
 
   
  0.599
Slin_6309
Sugar transferase (262 aa)
 
   
  0.598
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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