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Slin_6439 protein (Spirosoma linguale) - STRING interaction network
"Slin_6439" - Histidine kinase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6439Histidine kinase (657 aa)    
Predicted Functional Partners:
Slin_0458
Ankyrin (161 aa)
 
  0.959
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination (186 aa)
     
  0.958
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (329 aa)
   
  0.956
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1449 aa)
     
  0.954
Slin_5152
Protease Do (506 aa)
   
  0.953
Slin_2676
HtrA2 peptidase (351 aa)
   
  0.953
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1271 aa)
     
  0.949
Slin_4050
Type III restriction protein res subunit (453 aa)
     
    0.943
Slin_2087
DNA/RNA non-specific endonuclease (724 aa)
   
  0.943
Slin_1209
Peptidase S1 and S6 chymotrypsin/Hap (337 aa)
   
  0.942
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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