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Slin_6450 protein (Spirosoma linguale) - STRING interaction network
"Slin_6450" - RagB/SusD domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6450RagB/SusD domain-containing protein (493 aa)    
Predicted Functional Partners:
Slin_6451
TonB-dependent receptor plug (1062 aa)
 
          0.959
Slin_5654
RagB/SusD domain-containing protein (511 aa)
   
          0.757
Slin_5655
TonB-dependent receptor plug (1164 aa)
 
          0.751
Slin_6530
RagB/SusD domain-containing protein (521 aa)
   
          0.734
Slin_6053
TonB-dependent receptor plug (1006 aa)
 
          0.733
Slin_5059
TonB-dependent receptor plug (1047 aa)
 
          0.731
Slin_0802
Hypothetical protein (538 aa)
   
          0.729
Slin_5798
TonB-dependent receptor plug (1202 aa)
 
          0.728
Slin_4206
TonB-dependent receptor plug (1023 aa)
 
          0.725
Slin_1425
TonB-dependent receptor plug (1168 aa)
 
          0.721
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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