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Slin_6485 protein (Spirosoma linguale) - STRING interaction network
"Slin_6485" - Peptidase C1A papain in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6485Peptidase C1A papain (494 aa)    
Predicted Functional Partners:
Slin_5492
Proteinase inhibitor I4 serpin (412 aa)
   
 
    0.932
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner (366 aa)
   
 
    0.913
Slin_1758
Saccharopine dehydrogenase (407 aa)
     
 
    0.767
Slin_1687
Hypothetical protein (751 aa)
   
          0.742
Slin_4333
FG-GAP repeat-containing protein (758 aa)
   
          0.734
Slin_6487
ECF subfamily RNA polymerase sigma-24 subunit (210 aa)
              0.709
Slin_6486
Hypothetical protein (290 aa)
              0.709
Slin_4538
Hypothetical protein (225 aa)
   
 
    0.706
Slin_1833
Hypothetical protein (476 aa)
   
 
    0.699
Slin_6383
Thioredoxin (101 aa)
     
  0.653
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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