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Slin_6496 protein (Spirosoma linguale) - STRING interaction network
"Slin_6496" - ABC transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6496ABC transporter (208 aa)    
Predicted Functional Partners:
Slin_5540
ABC transporter (601 aa)
   
  0.916
Slin_4817
Sigma 54 interacting domain-containing protein (208 aa)
 
   
  0.913
Slin_1838
ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner (230 aa)
 
   
  0.907
Slin_1094
ABC transporter (584 aa)
   
  0.907
Slin_6331
ABC transporter (593 aa)
   
  0.902
Slin_5572
ABC transporter (593 aa)
   
  0.896
Slin_1469
ABC transporter (586 aa)
   
  0.892
Slin_1095
ABC transporter (587 aa)
   
  0.884
Slin_5121
ABC transporter (240 aa)
 
   
  0.867
Slin_6513
ABC transporter (613 aa)
   
0.842
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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