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Slin_6501 protein (Spirosoma linguale) - STRING interaction network
"Slin_6501" - Surface antigen in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6501Surface antigen (D15) (808 aa)    
Predicted Functional Partners:
Slin_6502
Hypothetical protein (1691 aa)
 
          0.972
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (103 aa)
   
          0.718
Slin_1528
Hypothetical protein (984 aa)
   
          0.715
Slin_0895
TonB-dependent receptor plug (806 aa)
   
          0.692
Slin_2314
DoxX family protein (380 aa)
   
          0.687
Slin_3301
Hypothetical protein (586 aa)
   
          0.680
Slin_4206
TonB-dependent receptor plug (1023 aa)
   
          0.670
Slin_3400
TonB-dependent receptor plug (1057 aa)
   
          0.667
Slin_3390
TonB-dependent receptor plug (1150 aa)
   
          0.662
Slin_1307
Outer membrane assembly lipoprotein YfiO (299 aa)
   
          0.662
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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