STRINGSTRING
Slin_6512 protein (Spirosoma linguale) - STRING interaction network
"Slin_6512" - PadR family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6512PadR family transcriptional regulator (114 aa)    
Predicted Functional Partners:
Slin_6511
Hypothetical protein (223 aa)
              0.859
Slin_6510
Hypothetical protein (232 aa)
              0.859
Slin_6509
Hypothetical protein (235 aa)
              0.840
Slin_2744
PadR family transcriptional regulator (135 aa)
   
          0.771
Slin_6508
Hypothetical protein (246 aa)
              0.750
Slin_6513
ABC transporter (613 aa)
              0.586
Slin_2743
Phage shock protein C (847 aa)
 
          0.410
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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