STRINGSTRING
Slin_6515 protein (Spirosoma linguale) - STRING interaction network
"Slin_6515" - Rhodopsin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6515Rhodopsin (268 aa)    
Predicted Functional Partners:
Slin_6514
Hypothetical protein (298 aa)
              0.840
Slin_6516
Hypothetical protein (218 aa)
              0.657
Slin_0600
Deoxyribodipyrimidine photo-lyase (561 aa)
   
          0.602
Slin_0262
Xaa-Pro aminopeptidase (468 aa)
   
          0.532
Slin_3019
Hypothetical protein (197 aa)
   
          0.522
Slin_4987
Hypothetical protein (296 aa)
   
          0.494
Slin_1124
Hypothetical protein (831 aa)
   
          0.486
Slin_1125
NADH dehydrogenase (quinone) (623 aa)
   
          0.482
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (435 aa)
              0.426
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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