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Slin_6542 protein (Spirosoma linguale) - STRING interaction network
"Slin_6542" - Prephenate dehydrogenase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6542Prephenate dehydrogenase (285 aa)    
Predicted Functional Partners:
Slin_2566
Chorismate mutase (357 aa)
 
  0.986
Slin_6129
Class I and II aminotransferase (390 aa)
   
 
  0.948
Slin_3478
Class I and II aminotransferase (379 aa)
   
 
  0.948
hisC
Histidinol-phosphate aminotransferase (374 aa)
   
 
  0.948
Slin_4403
Class I and II aminotransferase (405 aa)
       
  0.942
Slin_5731
DAHP synthetase I/KDSA (367 aa)
   
 
  0.941
Slin_2931
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate (405 aa)
       
  0.794
cmk
Cytidylate kinase (233 aa)
       
  0.789
Slin_6544
Class I and II aminotransferase (403 aa)
 
     
  0.752
aroB
3-dehydroquinate synthase (345 aa)
 
   
  0.683
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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