STRINGSTRING
Slin_6550 protein (Spirosoma linguale) - STRING interaction network
"Slin_6550" - Outer membrane efflux protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6550Outer membrane efflux protein (433 aa)    
Predicted Functional Partners:
Slin_6551
RND family efflux transporter MFP subunit (319 aa)
 
          0.962
Slin_6552
CzcA family heavy metal efflux pump (1060 aa)
 
   
  0.898
Slin_1293
Outer membrane efflux protein (442 aa)
   
          0.763
Slin_4809
phytanoyl-CoA dioxygenase (273 aa)
   
          0.731
Slin_2550
RND family efflux transporter MFP subunit (359 aa)
 
   
  0.697
Slin_6592
RND family efflux transporter MFP subunit (378 aa)
   
 
  0.693
Slin_2947
RND family efflux transporter MFP subunit (363 aa)
   
 
  0.693
Slin_2361
RND family efflux transporter MFP subunit (372 aa)
   
 
  0.693
Slin_0822
RND family efflux transporter MFP subunit (390 aa)
   
 
  0.693
Slin_5020
Hypothetical protein (418 aa)
   
 
  0.693
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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