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Slin_6555 protein (Spirosoma linguale) - STRING interaction network
"Slin_6555" - Pseudouridine synthase in Spirosoma linguale
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6555Pseudouridine synthase (240 aa)    
Predicted Functional Partners:
Slin_1448
Cytochrome C biogenesis protein CcmB (224 aa)
   
          0.673
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (357 aa)
 
        0.626
Slin_5836
Hypothetical protein (304 aa)
   
          0.626
Slin_6496
ABC transporter (208 aa)
 
 
      0.625
Slin_1445
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH (159 aa)
   
          0.605
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (676 aa)
 
        0.600
Slin_4634
Hypothetical protein (288 aa)
   
          0.593
Slin_0714
Hypothetical protein (109 aa)
   
          0.592
obg
GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control (334 aa)
 
 
  0.582
rplQ
50S ribosomal protein L17 (204 aa)
   
 
  0.581
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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