STRINGSTRING
Slin_6560 protein (Spirosoma linguale) - STRING interaction network
"Slin_6560" - L-arabinose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6560L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose (499 aa)    
Predicted Functional Partners:
araB
L-ribulokinase (544 aa)
   
 
  0.969
Slin_1237
alpha-L-arabinofuranosidase (513 aa)
       
  0.861
Slin_4183
GHMP kinase (347 aa)
   
   
    0.824
Slin_1423
Xylan 1,4-beta-xylosidase (558 aa)
       
    0.815
Slin_3934
Glycoside hydrolase family protein (576 aa)
         
    0.800
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose (496 aa)
         
    0.800
Slin_4377
Lipase (238 aa)
   
          0.708
Slin_1280
Penicillin-binding protein transpeptidase (1323 aa)
   
          0.682
Slin_0431
Hypothetical protein (341 aa)
   
          0.622
Slin_1249
alpha-L-rhamnosidase (951 aa)
   
          0.621
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]