STRINGSTRING
Slin_6590 protein (Spirosoma linguale) - STRING interaction network
"Slin_6590" - NodT family RND efflux system outer membrane lipoprotein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6590NodT family RND efflux system outer membrane lipoprotein (484 aa)    
Predicted Functional Partners:
Slin_6591
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter (1072 aa)
 
  0.985
Slin_6592
RND family efflux transporter MFP subunit (378 aa)
 
 
  0.980
Slin_2947
RND family efflux transporter MFP subunit (363 aa)
 
 
  0.941
Slin_0822
RND family efflux transporter MFP subunit (390 aa)
 
 
  0.940
Slin_2361
RND family efflux transporter MFP subunit (372 aa)
 
 
  0.911
Slin_2948
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter (1067 aa)
 
  0.900
Slin_0821
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter (1062 aa)
 
  0.891
Slin_2360
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter (1080 aa)
 
  0.864
Slin_5020
Hypothetical protein (418 aa)
   
 
  0.693
Slin_4653
Hypothetical protein (413 aa)
 
 
  0.693
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]