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Slin_6627 protein (Spirosoma linguale) - STRING interaction network
"Slin_6627" - Gliding motility-associated ABC transporter permease GldF in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6627Gliding motility-associated ABC transporter permease GldF (240 aa)    
Predicted Functional Partners:
Slin_4905
Gliding-associated ABC transporter substrate-binding protein GldG (555 aa)
     
  0.985
Slin_3471
Gliding motility-associated ABC transporter ATP-binding subunit GldA (305 aa)
 
   
  0.926
Slin_6628
VanZ family protein (108 aa)
              0.756
Slin_6626
Hypothetical protein (173 aa)
              0.709
Slin_6625
Hypothetical protein (183 aa)
              0.675
Slin_6624
Dihydroorotase (434 aa)
              0.675
Slin_4895
Gliding motility-associated lipoprotein GldD (195 aa)
   
     
  0.605
Slin_6496
ABC transporter (208 aa)
 
   
  0.575
Slin_5596
ABC transporter (232 aa)
   
   
  0.526
Slin_5365
ABC transporter (256 aa)
   
   
  0.526
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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