STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL88753.1Hypothetical protein. (499 aa)    
Predicted Functional Partners:
GAL88754.1
Hypothetical protein.
 
     0.951
GAL88755.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.816
GAL87899.1
Hypothetical protein.
  
     0.731
GAL88752.1
M23/M37 peptidase.
       0.691
GAL88788.1
Hypothetical protein.
  
     0.665
GAL90327.1
Hypothetical protein.
  
     0.664
GAL90970.1
Hypothetical protein.
  
     0.648
GAL88492.1
Membrane protein putative.
  
     0.633
GAL88601.1
Hypothetical protein.
  
     0.631
GAL90608.1
Hypothetical protein.
  
     0.621
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.