STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI05640.1Putative response regulator protein. (360 aa)    
Predicted Functional Partners:
AEI05125.1
Diguanylate cyclase/phosphodiesterase.
 
 0.830
AEI06133.1
GGDEF domain protein.
 
  
 0.825
cph
Phytochrome-like protein Cph.
 
 0.818
AEI04815.1
Putative diguanylate cyclase.
 
 0.816
AEI06825.1
GGDEF domain protein.
 
 0.812
AEI05472.1
GGDEF domain protein.
 
  
 0.809
AEI06727.1
GGDEF domain protein.
 
 0.800
AEI07711.1
Diguanylate cyclase.
 
 0.795
AEI04933.1
GGDEF domain protein.
 
 0.791
AEI06024.1
GGDEF domain protein.
 
 0.790
Your Current Organism:
Oligotropha carboxidovorans
NCBI taxonomy Id: 504832
Other names: O. carboxidovorans OM5, Oligotropha carboxidovorans OM5, Oligotropha carboxidovorans str. OM5, Oligotropha carboxidovorans strain OM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.