STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0383PFAM: NUDIX hydrolase; KEGG: ccs:CCNA_00412 CoA pyrophosphatase. (215 aa)    
Predicted Functional Partners:
nnrE
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
 0.836
Cseg_0382
PFAM: protein of unknown function DUF1285; KEGG: ccs:CCNA_00411 hypothetical protein.
       0.815
Cseg_0384
PFAM: Polynucleotide adenylyltransferase region; KEGG: ccs:CCNA_00413 poly(A) polymerase/tRNA-nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
   
 
 0.814
Cseg_0385
PFAM: glutamine amidotransferase class-I; KEGG: ccr:CC_0409 glutamine amidotransferase, class-I family protein.
  
    0.763
Cseg_0381
PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_00410 acetyltransferase.
       0.672
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
 0.557
Cseg_0879
KEGG: ccs:CCNA_00878 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
    
 0.503
Cseg_1957
KEGG: ccs:CCNA_01546 DEAD-box RNA helicase-like protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.
    
 0.503
Cseg_2135
KEGG: ccs:CCNA_01923 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.
    
 0.503
Cseg_3711
Helicase domain protein; KEGG: ccs:CCNA_00694 ATP-dependent DNA helicase; PFAM: helicase domain protein; SMART: helicase domain protein.
    
 0.503
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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