Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Cseg_0627 | Cseg_0628 | PFAM: protein of unknown function DUF1192; KEGG: ccs:CCNA_03403 hypothetical protein. | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | 0.578 |
Cseg_0627 | Cseg_0629 | PFAM: protein of unknown function DUF1192; KEGG: ccs:CCNA_03403 hypothetical protein. | PFAM: protein of unknown function DUF1013; KEGG: ccs:CCNA_03401 cytosolic protein. | 0.423 |
Cseg_0628 | Cseg_0627 | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | PFAM: protein of unknown function DUF1192; KEGG: ccs:CCNA_03403 hypothetical protein. | 0.578 |
Cseg_0628 | Cseg_0629 | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | PFAM: protein of unknown function DUF1013; KEGG: ccs:CCNA_03401 cytosolic protein. | 0.524 |
Cseg_0628 | Cseg_1356 | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | KEGG: gvi:gll2260 oxidoreductase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | 0.439 |
Cseg_0628 | Cseg_1415 | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: ccs:CCNA_02095 putative NADP-dependent oxidoreductase. | 0.538 |
Cseg_0629 | Cseg_0627 | PFAM: protein of unknown function DUF1013; KEGG: ccs:CCNA_03401 cytosolic protein. | PFAM: protein of unknown function DUF1192; KEGG: ccs:CCNA_03403 hypothetical protein. | 0.423 |
Cseg_0629 | Cseg_0628 | PFAM: protein of unknown function DUF1013; KEGG: ccs:CCNA_03401 cytosolic protein. | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | 0.524 |
Cseg_1356 | Cseg_0628 | KEGG: gvi:gll2260 oxidoreductase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | 0.439 |
Cseg_1415 | Cseg_0628 | PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: ccs:CCNA_02095 putative NADP-dependent oxidoreductase. | KEGG: ccs:CCNA_03402 quinone oxidoreductase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | 0.538 |