STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1904KEGG: cak:Caul_4996 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Cseg_1903
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cak:Caul_4997 mercuric reductase.
 
     0.929
Cseg_1905
KEGG: ccs:CCNA_01491 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
       0.532
Cseg_1906
Rhodanese domain protein; KEGG: ccs:CCNA_01492 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
       0.512
Cseg_1902
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cak:Caul_2058 NADH:flavin oxidoreductase/NADH oxidase.
       0.492
Cseg_3524
PFAM: Methyltransferase type 12; KEGG: mpa:MAP1004 hypothetical protein.
  
     0.482
Cseg_2276
PFAM: protein of unknown function DUF1275; KEGG: cak:Caul_2541 hypothetical protein.
  
     0.468
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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