STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2064KEGG: ccs:CCNA_00645 nitrate binding protein NrtA. (428 aa)    
Predicted Functional Partners:
Cseg_2062
TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: ccs:CCNA_00647 nitrate transport ATP-binding protein NrtD; SMART: AAA ATPase.
 
 0.997
Cseg_2063
Nitrate ABC transporter, inner membrane subunit; KEGG: ccs:CCNA_00646 nitrate transport permease protein NrtB; TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.997
Cseg_2056
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cak:Caul_2954 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.988
Cseg_2061
PFAM: ANTAR domain protein; KEGG: ccs:CCNA_00648 nitrate response regulator NasT.
 
  
 0.882
Cseg_2065
KEGG: ccs:CCNA_00644 hypothetical protein.
 
     0.804
Cseg_2058
KEGG: cak:Caul_2956 nitrite reductase (NAD(P)H), large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.709
Cseg_2026
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cak:Caul_2657 binding-protein-dependent transport systems inner membrane component.
 
  
 0.702
Cseg_2057
KEGG: cak:Caul_2955 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain.
 
  
 0.678
Cseg_1066
ABC transporter related protein; KEGG: ccs:CCNA_02717 maltose/maltodextrin transport ATP-binding protein MalK; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.659
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
 0.657
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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