NECAME_04915 protein (Necator americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NECAME_04915

Uncharacterized protein. (97 aa)

Predicted Functional Partners:

NECAME_04114

0.860

NECAME_13972

0.630

NECAME_10268

0.559

NECAME_10269

0.559

NECAME_10426

0.548

NECAME_15438

0.521

NECAME_15437

0.521

NECAME_15436

0.521

NECAME_03808

0.446

NECAME_11354

0.442

Your Current Organism:

Necator americanus

NCBI taxonomy Id: 51031
Other names: N. americanus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NECAME_03808	NECAME_04915	W2SZC3	W2SP61	RNA helicase.	Uncharacterized protein.	0.446
NECAME_03808	NECAME_10268	W2SZC3	W2TBJ6	RNA helicase.	Kinase domain protein.	0.437
NECAME_03808	NECAME_10269	W2SZC3	W2TC37	RNA helicase.	R3H domain protein.	0.437
NECAME_03808	NECAME_13972	W2SZC3	W2SQW6	RNA helicase.	Chromo domain-containing protein.	0.430
NECAME_04114	NECAME_04915	W2SWW7	W2SP61	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	Uncharacterized protein.	0.860
NECAME_04114	NECAME_15436	W2SWW7	W2SKJ9	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	Uncharacterized protein.	0.485
NECAME_04114	NECAME_15437	W2SWW7	W2SI53	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	Uncharacterized protein.	0.485
NECAME_04114	NECAME_15438	W2SWW7	W2SHY1	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	Tudor domain protein.	0.485
NECAME_04915	NECAME_03808	W2SP61	W2SZC3	Uncharacterized protein.	RNA helicase.	0.446
NECAME_04915	NECAME_04114	W2SP61	W2SWW7	Uncharacterized protein.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.860
NECAME_04915	NECAME_10268	W2SP61	W2TBJ6	Uncharacterized protein.	Kinase domain protein.	0.559
NECAME_04915	NECAME_10269	W2SP61	W2TC37	Uncharacterized protein.	R3H domain protein.	0.559
NECAME_04915	NECAME_10426	W2SP61	W2TAX7	Uncharacterized protein.	Nanos RNA binding domain protein; Belongs to the nanos family.	0.548
NECAME_04915	NECAME_11354	W2SP61	W2T543	Uncharacterized protein.	Uncharacterized protein.	0.442
NECAME_04915	NECAME_13972	W2SP61	W2SQW6	Uncharacterized protein.	Chromo domain-containing protein.	0.630
NECAME_04915	NECAME_15436	W2SP61	W2SKJ9	Uncharacterized protein.	Uncharacterized protein.	0.521
NECAME_04915	NECAME_15437	W2SP61	W2SI53	Uncharacterized protein.	Uncharacterized protein.	0.521
NECAME_04915	NECAME_15438	W2SP61	W2SHY1	Uncharacterized protein.	Tudor domain protein.	0.521
NECAME_10268	NECAME_03808	W2TBJ6	W2SZC3	Kinase domain protein.	RNA helicase.	0.437
NECAME_10268	NECAME_04915	W2TBJ6	W2SP61	Kinase domain protein.	Uncharacterized protein.	0.559