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JT27_00850 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_00850" - Uncharacterized protein in Alcaligenes faecalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_00850Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)    
Predicted Functional Partners:
JT27_00845
GTP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)
 
   
  0.974
JT27_00855
Benzoate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (387 aa)
 
          0.817
catC
Muconolactone Delta-isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the muconolactone Delta-isomerase family (91 aa)
 
          0.678
JT27_00880
mRNA 3’-end processing factor; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
 
          0.637
JT27_00865
3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
 
          0.634
JT27_00885
Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family (396 aa)
 
          0.567
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (263 aa)
     
 
  0.532
JT27_00890
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
          0.500
JT27_00870
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
              0.470
JT27_12340
Nucleotide pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (124 aa)
     
 
  0.458
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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