STRINGSTRING
JT27_01010 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_01010" - Uncharacterized protein in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_01010Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)    
Predicted Functional Partners:
JT27_01005
Receptor; Derived by automated computational analysis using gene prediction method- Protein Homology (1055 aa)
 
          0.918
JT27_01015
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (495 aa)
 
          0.898
JT27_02200
Prophage PSSB64-02; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
   
          0.522
JT27_01000
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
 
          0.449
JT27_12510
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
   
          0.437
JT27_00945
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (144 aa)
 
          0.432
JT27_08120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (170 aa)
   
          0.432
JT27_06580
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (179 aa)
   
          0.429
JT27_00370
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
   
          0.426
JT27_17735
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (167 aa)
   
          0.423
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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