STRINGSTRING
JT27_01320 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_01320" - Helicase in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_01320Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (1101 aa)    
Predicted Functional Partners:
JT27_01325
Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
 
          0.968
JT27_01340
DNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (630 aa)
 
 
      0.918
JT27_01350
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method- Protein Homology (1028 aa)
 
          0.906
JT27_01315
Excisionase; Derived by automated computational analysis using gene prediction method- Protein Homology (65 aa)
 
          0.799
JT27_01335
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
 
          0.734
JT27_01330
Fibronectin-binding protein (FBP); Derived by automated computational analysis using gene prediction method- Protein Homology (451 aa)
 
          0.724
JT27_17055
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1824 aa)
   
 
  0.684
JT27_01345
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (366 aa)
              0.559
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (905 aa)
   
 
  0.542
JT27_13030
DNA polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (572 aa)
 
     
  0.537
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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