STRINGSTRING
JT27_01460 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_01460" - Single-stranded DNA exonuclease in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_01460Single-stranded DNA exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (569 aa)    
Predicted Functional Partners:
JT27_01455
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
         
  0.906
JT27_01435
Competence protein ComEC; Derived by automated computational analysis using gene prediction method- Protein Homology (822 aa)
 
     
  0.847
mpl
UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate; Belongs to the MurCDEF family. Mpl subfamily (454 aa)
 
  0.823
ruvA
Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB (193 aa)
 
 
  0.810
lysS
Lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family (507 aa)
            0.795
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner; Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family (237 aa)
   
        0.783
JT27_10910
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method- Protein Homology (608 aa)
 
   
  0.774
JT27_14715
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA (549 aa)
 
 
 
  0.763
JT27_16340
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (196 aa)
 
   
  0.763
JT27_01450
Cell division protein FtsX; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
              0.756
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (9%) [HD]