STRINGSTRING
kdsB protein (Alcaligenes faecalis) - STRING interaction network
"kdsB" - 3-deoxy-manno-octulosonate cytidylyltransferase in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdsB3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria (254 aa)    
Predicted Functional Partners:
lpxK
Tetraacyldisaccharide 4’-kinase; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (359 aa)
   
  0.996
JT27_07920
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (200 aa)
  0.991
JT27_03020
3-deoxy-D-manno-octulosonic acid transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (441 aa)
 
 
  0.986
JT27_01900
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
 
   
  0.942
JT27_07925
D-arabinose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily (318 aa)
 
   
  0.940
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the KdsA family (283 aa)
 
 
  0.928
JT27_01905
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method- Protein Homology (134 aa)
 
   
  0.922
lpxC
UDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family (307 aa)
 
 
  0.921
lpxA
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (262 aa)
 
   
  0.917
JT27_01915
UPF0434 protein JT27_01915; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0434 family (61 aa)
   
        0.905
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: medium (51%) [HD]