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JT27_02680 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_02680" - Helicase in Alcaligenes faecalis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_02680Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (520 aa)    
Predicted Functional Partners:
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (572 aa)
     
 
  0.696
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (263 aa)
     
      0.599
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (825 aa)
     
 
  0.555
JT27_08550
Ribonuclease II; Derived by automated computational analysis using gene prediction method- Protein Homology (629 aa)
     
 
  0.555
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (245 aa)
     
 
  0.536
JT27_14955
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method- Protein Homology (791 aa)
 
 
        0.490
JT27_02675
Multidrug transporter CflA; Derived by automated computational analysis using gene prediction method- Protein Homology (397 aa)
              0.483
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (174 aa)
     
 
  0.445
JT27_03390
RNA helicase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DEAD box helicase family (487 aa)
   
 
  0.440
JT27_13985
ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DEAD box helicase family (414 aa)
   
 
  0.435
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
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