STRINGSTRING
JT27_03030 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_03030" - LysR family transcriptional regulator in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_03030LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)    
Predicted Functional Partners:
JT27_03035
Putative hydro-lyase JT27_03035; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-glutamate cyclase family (267 aa)
 
          0.706
JT27_04720
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
        0.676
JT27_12845
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.603
JT27_03040
Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
 
          0.585
JT27_03025
Heptosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
              0.584
JT27_03055
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
 
          0.577
JT27_03235
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
   
          0.558
JT27_03045
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (206 aa)
 
          0.526
JT27_17600
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
   
          0.439
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (15%) [HD]