STRINGSTRING
JT27_03080 protein (Alcaligenes faecalis) - STRING interaction network
"JT27_03080" - DNA processing protein DprA in Alcaligenes faecalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JT27_03080DNA processing protein DprA; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)    
Predicted Functional Partners:
JT27_01435
Competence protein ComEC; Derived by automated computational analysis using gene prediction method- Protein Homology (822 aa)
 
   
  0.870
JT27_00120
Among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
 
  0.765
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus (313 aa)
 
          0.758
JT27_14715
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA (549 aa)
 
   
  0.739
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (203 aa)
 
     
  0.735
JT27_16605
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0758 family (223 aa)
   
   
  0.713
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (172 aa)
              0.701
JT27_13050
DNA repair protein RadC; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0758 family (185 aa)
   
   
  0.687
JT27_07780
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
 
   
  0.674
JT27_03085
Hydroxymethylglutaryl-CoA lyase; Catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
         
  0.585
Your Current Organism:
Alcaligenes faecalis
NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Alcaligenes faecalis, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953
Server load: low (13%) [HD]